NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM396158 Query DataSets for GSM396158
Status Public on Apr 14, 2010
Title MF_IV_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 4h
drug: Morphine
group no.: 5
large batch: X
plate: 1957998117
hybridization batch: I
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.194475093
ILMN_3160339 7.061740127
ILMN_3161159 7.278806097
ILMN_2758597 6.917430571
ILMN_2644469 12.48183006
ILMN_2656393 7.766374222
ILMN_3160634 7.415996972
ILMN_3161394 11.05791957
ILMN_2610322 6.615184667
ILMN_2741606 7.198959928
ILMN_1247267 10.13928642
ILMN_2594811 6.930346649
ILMN_2689425 6.305290933
ILMN_2745565 6.573858563
ILMN_1212992 6.147829431
ILMN_2629183 6.690663244
ILMN_1251092 8.957217037
ILMN_2715803 9.999269354
ILMN_2762509 11.82206061
ILMN_2496817 10.44726384

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap