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Sample GSM396163 Query DataSets for GSM396163
Status Public on Apr 14, 2010
Title .SAL_VIII_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Saline
group no.: 18
large batch: X
plate: 4051964034
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.013494412
ILMN_3160339 6.735307104
ILMN_3161159 7.807292156
ILMN_2758597 6.686864335
ILMN_2644469 13.18561317
ILMN_2656393 7.571806231
ILMN_3160634 7.083354104
ILMN_3161394 10.42739501
ILMN_2610322 6.265337721
ILMN_2741606 7.150110299
ILMN_1247267 9.628440818
ILMN_2594811 7.276839379
ILMN_2689425 6.566183189
ILMN_2745565 6.396274123
ILMN_1212992 6.353159011
ILMN_2629183 6.027194405
ILMN_1251092 9.016034658
ILMN_2715803 9.961285846
ILMN_2762509 11.78477736
ILMN_2496817 10.28289959

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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