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Sample GSM396173 Query DataSets for GSM396173
Status Public on Apr 14, 2010
Title MF_II_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 2h
drug: Morphine
group no.: 4
large batch: X
plate: 4051964045
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.297641787
ILMN_3160339 7.117086991
ILMN_3161159 8.052966241
ILMN_2758597 7.168370272
ILMN_2644469 12.53418436
ILMN_2656393 7.830347344
ILMN_3160634 7.572005516
ILMN_3161394 10.96331779
ILMN_2610322 6.729500903
ILMN_2741606 7.209639654
ILMN_1247267 10.63308399
ILMN_2594811 6.908483847
ILMN_2689425 6.276131274
ILMN_2745565 6.628391932
ILMN_1212992 6.488345413
ILMN_2629183 6.609758494
ILMN_1251092 9.479456756
ILMN_2715803 9.645028339
ILMN_2762509 11.71992733
ILMN_2496817 10.55463831

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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