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Sample GSM396210 Query DataSets for GSM396210
Status Public on Apr 14, 2010
Title ..SAL_IV_1
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 4h
drug: Saline
group no.: 38
large batch: Y
plate: 4164379028
hybridization batch: IV
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.37879058
ILMN_3160339 7.124876088
ILMN_3161159 7.904593228
ILMN_2758597 7.179660745
ILMN_2644469 12.92648133
ILMN_2656393 7.866377581
ILMN_3160634 7.313257169
ILMN_3161394 10.40725684
ILMN_2610322 6.611286834
ILMN_2741606 7.182352397
ILMN_1247267 9.93407441
ILMN_2594811 6.990179359
ILMN_2689425 6.124757631
ILMN_2745565 6.450600255
ILMN_1212992 6.354370892
ILMN_2629183 6.474771068
ILMN_1251092 9.187226134
ILMN_2715803 10.26233302
ILMN_2762509 11.90798916
ILMN_2496817 10.06032311

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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