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Sample GSM396227 Query DataSets for GSM396227
Status Public on Apr 14, 2010
Title MET_VIII_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Methamphetamine
group no.: 27
large batch: Y
plate: 4164379045
hybridization batch: IV
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.287181973
ILMN_3160339 7.074219106
ILMN_3161159 7.830998892
ILMN_2758597 6.910349657
ILMN_2644469 13.05303784
ILMN_2656393 7.902286695
ILMN_3160634 7.352344696
ILMN_3161394 11.23906931
ILMN_2610322 6.592425201
ILMN_2741606 7.311510817
ILMN_1247267 9.936361203
ILMN_2594811 7.169685709
ILMN_2689425 6.329741759
ILMN_2745565 6.563475016
ILMN_1212992 6.573948843
ILMN_2629183 6.611892864
ILMN_1251092 9.507969624
ILMN_2715803 10.18655866
ILMN_2762509 12.40381741
ILMN_2496817 10.40011434

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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