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Sample GSM396815 Query DataSets for GSM396815
Status Public on May 08, 2009
Title mouse 4 with the human c-Src transgene inserted downstream of the mouse metallothionein promoter
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics genotype: human c-Src transgene inserted downstream of the mouse metallothionein promoter
tissue: liver
strain: c57bl/6
age: 14 month old
Extracted molecule total RNA
Extraction protocol TRIzol reagent (Invitrogen) Cleanup with Qiagen Rneasy
Label Alexa-647 Streptavidin
Label protocol Biotin labeled cRNA was prepared by linear amplification of the poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Array hybridized at 37C for 18h
Scan protocol Array scanned with Axon GenePixPro 4000B
Description liver tissue from 14 month old C57Bl/6 mouse
Data processing The output was generated for GeneSpring import by CodeLink Expression Analysis Software v4.1 (GE Healthcare), which creates a txt file compatible with GeneSpring. Raw values represent the final number of the spot after background is subtracted out. Normalized values represent median global normialzation method - raw intensity/median intensity of all spots on the array
 
Submission date Apr 23, 2009
Last update date May 07, 2009
Contact name Rosalyn B. Irby
E-mail(s) rirby@psu.edu
Phone 717-531-5035
Fax 717-531-0743
URL http://www.psu.edu
Organization name Pennsylvania State University Hershey Medical Center
Department Medicine
Street address 500 University Drive
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platform ID GPL2897
Series (1)
GSE15815 Src kinase Induces Tumor Formation in the cSRC C57BL/6 Mouse

Data table header descriptions
ID_REF Array specific number based on location of probe
VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE
1002 0.353592452
1003 0.245282499
1004 1.202244264
1005 0.405955153
1006 0.280735539
1010 0.612622606
1012 0.191138853
1013 1.76029202
1017 0.126553304
1018 0.345496414
1019 0.176827482
1020 0.129192781
1024 0.153854436
1026 0.444849551
1027 0.483328242
1030 0.13992211
1031 0.393015988
1034 0.179142026
1039 1.16968508
1040 0.387235635

Total number of rows: 35029

Table truncated, full table size 637 Kbytes.




Supplementary file Size Download File type/resource
GSM396815.txt.gz 872.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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