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Sample GSM398021 Query DataSets for GSM398021
Status Public on Apr 28, 2009
Title GBM_Cell Line_1
Sample type RNA
 
Source name GBM
Organism Homo sapiens
Characteristics cell line: GBM
Treatment protocol Full details of the cell lines culture prior RNA extraction have been described by Fael Al-Mayhani et al, 2009
Growth protocol GBM cell lines were derived from excised GBM tumours and cultured under serum-free conditions with EGF and FGF. Full details of the derivation and culture protocol have been described by Fael Al-Mayhani et al, 2009
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen RNAeasy kit
Label Cy3
Label protocol Cy3
 
Hybridization protocol Standard Illumina hybridization protocol by Centre for Microarray Resources at the department of Pathology of the University of Cambridge, UK
Scan protocol Standard Illumina scan protocol by Centre for Microarray Resources at the department of Pathology of the University of Cambridge, UK
Description none
Data processing Robust spline normalization
 
Submission date Apr 27, 2009
Last update date Apr 27, 2009
Contact name Talal M. Fael Al-Mayhani
Phone 01223-331160
Fax 01223-331174
Organization name University of Cambridge
Department Clinical Neurosciences
Street address Forvie Site, Robinson Way
City Cambridge
State/province Cambridgeshire
ZIP/Postal code CB2 0PY
Country United Kingdom
 
Platform ID GPL6883
Series (1)
GSE15846 GBM cell lines derived and propagated according to Cambridge protocol

Data table header descriptions
ID_REF
VALUE robust spline normalization

Data table
ID_REF VALUE
ILMN_1809034 156.5042361
ILMN_1660305 408.0757888
ILMN_2055271 58.02374721
ILMN_1787689 66.3566632
ILMN_1745607 3110.194018
ILMN_1735045 139.2025567
ILMN_1680754 68.29484293
ILMN_1755321 140.6842983
ILMN_1698554 161.4243482
ILMN_2061446 1205.902867
ILMN_2270015 57.3458716
ILMN_1653165 478.7260482
ILMN_1662364 5706.353983
ILMN_1700461 738.2318701
ILMN_1674698 430.0161834
ILMN_1784269 523.7666775
ILMN_2096191 1405.256324
ILMN_2157219 208.0730619
ILMN_1703743 1253.047438
ILMN_1687609 73.81675331

Total number of rows: 16378

Table truncated, full table size 398 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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