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Sample GSM398026 Query DataSets for GSM398026
Status Public on Apr 28, 2009
Title GBM_Cell Line_7
Sample type RNA
 
Source name GBM
Organism Homo sapiens
Characteristics cell line: GBM
Treatment protocol Full details of the cell lines culture prior RNA extraction have been described by Fael Al-Mayhani et al, 2009
Growth protocol GBM cell lines were derived from excised GBM tumours and cultured under serum-free conditions with EGF and FGF. Full details of the derivation and culture protocol have been described by Fael Al-Mayhani et al, 2009
Extracted molecule total RNA
Extraction protocol RNA was extracted using Qiagen RNAeasy kit
Label Cy3
Label protocol Cy3
 
Hybridization protocol Standard Illumina hybridization protocol by Centre for Microarray Resources at the department of Pathology of the University of Cambridge, UK
Scan protocol Standard Illumina scan protocol by Centre for Microarray Resources at the department of Pathology of the University of Cambridge, UK
Description none
Data processing Robust spline normalization
 
Submission date Apr 27, 2009
Last update date Apr 27, 2009
Contact name Talal M. Fael Al-Mayhani
Phone 01223-331160
Fax 01223-331174
Organization name University of Cambridge
Department Clinical Neurosciences
Street address Forvie Site, Robinson Way
City Cambridge
State/province Cambridgeshire
ZIP/Postal code CB2 0PY
Country United Kingdom
 
Platform ID GPL6883
Series (1)
GSE15846 GBM cell lines derived and propagated according to Cambridge protocol

Data table header descriptions
ID_REF
VALUE robust spline normalization

Data table
ID_REF VALUE
ILMN_1809034 357.7084368
ILMN_1660305 458.873349
ILMN_2055271 69.19544132
ILMN_1787689 65.60430513
ILMN_1745607 4957.790319
ILMN_1735045 104.5185475
ILMN_1680754 70.01173805
ILMN_1755321 275.6770206
ILMN_1698554 493.7849206
ILMN_2061446 554.7468575
ILMN_2270015 77.805671
ILMN_1653165 560.9047368
ILMN_1662364 10956.7744
ILMN_1700461 916.9931335
ILMN_1674698 626.7163351
ILMN_1784269 273.7094381
ILMN_2096191 1277.748475
ILMN_2157219 311.34004
ILMN_1703743 1388.404674
ILMN_1687609 99.99557577

Total number of rows: 16378

Table truncated, full table size 397 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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