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Sample GSM399381 Query DataSets for GSM399381
Status Public on May 02, 2009
Title T.8SP24-.Th#3
Sample type RNA
 
Source name thymus
Organism Mus musculus
Characteristics age: 6 weeks
exclusion markers: 11b- 11c- 19- 49b- Gr1- TER119-
genetic background: C57BL/6J
phenotype markers: 4- 8+ TCRhi 24-/lo
separation method: dissection/trimming
Sex: male
Extracted molecule total RNA
Extraction protocol Glass slide teasing Flow sorting
Label Biotin
Label protocol Affy GeneChip WT cDNA Synthesis kit/cRNA Cleanup kit
 
Hybridization protocol Affy 1.0 ST Hyb Kit
Scan protocol Affymetrix GeneChip Scanner
Description T.8SP24-.Th#3, CD8 Single-Positive, Mature
Data processing The datasets were pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
 
Submission date Apr 30, 2009
Last update date Jul 21, 2021
Contact name Liang Yang
Organization name Harvard Medical School
Department Pathology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6246
Series (1)
GSE15907 ImmGen Microarray Phase 1
Relations
Reanalyzed by GSE180556

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
10344620 14.617
10344622 216.3757
10344624 440.4971
10344633 794.7291
10344637 289.1242
10344653 16.9981
10344658 150.9736
10344674 13.2231
10344679 37.556
10344707 205.7232
10344713 605.5481
10344723 290.7216
10344725 33.2989
10344741 2854.1182
10344743 24.2782
10344750 436.7192
10344772 26.7105
10344789 117.7766
10344797 336.1225
10344799 126.4369

Total number of rows: 24922

Table truncated, full table size 422 Kbytes.




Supplementary file Size Download File type/resource
GSM399381_EA07068_52782_MoGene_T.8SP24-.Th_#3.cel.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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