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Sample GSM399397 Query DataSets for GSM399397
Status Public on May 02, 2009
Title T.DPbl.Th#1
Sample type RNA
 
Source name thymus
Organism Mus musculus
Characteristics age: 6 weeks
exclusion markers: 11b- 11c- 19- 49b- Gr1- TER119-
genetic background: C57BL/6J
phenotype markers: 4+ 8+ TCR-/lo FSChi
separation method: dissection/trimming
Sex: male
Extracted molecule total RNA
Extraction protocol Glass Slide Flow Sorting
Label Biotin
Label protocol Affy GeneChip WT cDNA Synthesis kit/cRNA Cleanup kit
 
Hybridization protocol Affy 1.0 ST Hyb Kit
Scan protocol Affymetrix GeneChip Scanner
Description T.DPbl.Th#1, Double-Positive, Blasts
Data processing The datasets were pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
 
Submission date Apr 30, 2009
Last update date May 24, 2016
Contact name Liang Yang
Organization name Harvard Medical School
Department Pathology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6246
Series (1)
GSE15907 ImmGen Microarray Phase 1

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
10344620 16.0862
10344622 324.7323
10344624 377.7745
10344633 736.3623
10344637 181.187
10344653 14.6615
10344658 364.9943
10344674 8.7062
10344679 44.2748
10344707 217.5385
10344713 687.5617
10344723 175.9233
10344725 43.8767
10344741 5154.2874
10344743 25.1773
10344750 324.1738
10344772 22.144
10344789 504.0006
10344797 266.1977
10344799 587.2508

Total number of rows: 24922

Table truncated, full table size 422 Kbytes.




Supplementary file Size Download File type/resource
GSM399397_EA07068_56645_MoGene_T.DPbl.Th_#1.cel.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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