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Sample GSM399920 Query DataSets for GSM399920
Status Public on Feb 08, 2012
Title 4F-Control 9%
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics strain: C57bl/6J OlaHsd
gender: Female
age: 20wks
tissue: Liver
diet: Control 9%
Treatment protocol Pregnant females were fed a control diet (18%) or a low protein diet 9% (90 g casein/kg) during the gestational period, offspring was placed after 6 wks on HF diet (36% SF) or a control diet for 14 wks.
Extracted molecule total RNA
Extraction protocol RNA was extracted with TriReagent (Sigma). Quality control was performed with Agilent Bioanalyzer.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit (Applied Biosystems)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Biological replicate 4
Data processing The data after background substraction were normalized using quantile normalization with BeadStudio Expression Module 3.2.7
 
Submission date May 04, 2009
Last update date Feb 09, 2012
Contact name vincent bloks
E-mail(s) v.w.bloks@umcg.nl
Organization name UMCG
Department Pediatrics
Lab Pediatrics
Street address Hanzeplein1
City Groningen
ZIP/Postal code 9713GZ
Country Netherlands
 
Platform ID GPL6885
Series (1)
GSE15940 Sex-Dependent Programming of Glucose and Fatty Acid Metabolism in Mouse Offspring by Maternal Protein Restriction

Data table header descriptions
ID_REF
VALUE BeadStudio (3.2.7) quantile normalized signal

Data table
ID_REF VALUE
ILMN_2896528 1637.907
ILMN_2721178 397.8394
ILMN_3033922 932.5596
ILMN_3092673 4321.662
ILMN_2816356 26.2053
ILMN_2808939 1358.459
ILMN_2634564 316.1667
ILMN_2737647 10.18282
ILMN_2734484 706.8735
ILMN_2952292 48.13501
ILMN_2699078 -8.040449
ILMN_1213681 135.0649
ILMN_2735413 664.6317
ILMN_2735415 686.9379
ILMN_2891688 621.1647
ILMN_2637698 430.7898
ILMN_2674228 161.4573
ILMN_2601546 3.953353
ILMN_1230831 5.459528
ILMN_2848071 1165.482

Total number of rows: 25697

Table truncated, full table size 558 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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