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Sample GSM399939 Query DataSets for GSM399939
Status Public on Feb 08, 2012
Title 7M-HighFat 9%
Sample type RNA
 
Source name Liver
Organism Mus musculus
Characteristics strain: C57bl/6J OlaHsd
gender: Male
age: 20wks
tissue: Liver
diet: HighFat 9%
Treatment protocol Pregnant females were fed a control diet (18%) or a low protein diet 9% (90 g casein/kg) during the gestational period, offspring was placed after 6 wks on HF diet (36% SF) or a control diet for 14 wks.
Extracted molecule total RNA
Extraction protocol RNA was extracted with TriReagent (Sigma). Quality control was performed with Agilent Bioanalyzer.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit (Applied Biosystems)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Biological replicate 3
Data processing The data after background substraction were normalized using quantile normalization with BeadStudio Expression Module 3.2.7
 
Submission date May 04, 2009
Last update date Feb 09, 2012
Contact name vincent bloks
Organization name UMCG
Department Pediatrics
Lab Pediatrics
Street address Hanzeplein1
City Groningen
ZIP/Postal code 9713GZ
Country Netherlands
 
Platform ID GPL6103
Series (1)
GSE15940 Sex-Dependent Programming of Glucose and Fatty Acid Metabolism in Mouse Offspring by Maternal Protein Restriction

Data table header descriptions
ID_REF
VALUE BeadStudio (3.2.7) quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212602 -4.051599
ILMN_1212605 123.1206
ILMN_1212607 21.26592
ILMN_1212612 13.38859
ILMN_1212616 5.588696
ILMN_1212619 -2.778162
ILMN_1212626 16.17258
ILMN_1212628 -3.875058
ILMN_1212632 17.94602
ILMN_1212636 704.886
ILMN_1212637 1945.771
ILMN_1212644 4.138148
ILMN_1212645 1922.181
ILMN_1212646 129.1764
ILMN_1212648 36.62285
ILMN_1212672 71.26755
ILMN_1212681 -7.091257
ILMN_1212682 7.87241
ILMN_1212683 -2.854251
ILMN_1212685 -6.798421

Total number of rows: 24613

Table truncated, full table size 535 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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