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Status
Public on Jan 27, 2006
Title
WT, PR01M003v0
Sample type
RNA
Source name
Anterior tibialis
Organism
Mus musculus Extracted molecule
total RNA
Description
OrganismPart:Muscle;StrainOrLine:C57BL6/129SV; Anterior tibialis removed from 3-month old muscle glycogen synthase WT or knockout mouse. RNA was extracted using GibcoBRL TRIzol Reagent and a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Submission date
Jan 27, 2005
Last update date
May 29, 2005
Contact name
Peter Roach
E-mail(s)
proach@iupui.edu Phone
317-274-1583
Organization name
IU School of Medicine
Department
Street address
City
Indianapolis
State/province
IN
ZIP/Postal code
46202
Country
USA
Platform ID
GPL339 Series (1)
GSE2198 Comparison of transcripts from the anterior tibialis, gastrocnemius, and liver of glycogen synthase WT, GSL30 or KO mice
Data table header descriptions ID_REF
VALUE signal, a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present(P), absent(A), marginal(M), or no call(NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
683.30000
P
0.00402
AFFX-BioB-M_at
835.50000
P
0.00010
AFFX-BioB-3_at
386.30000
P
0.00256
AFFX-BioC-5_at
1652.40000
P
0.00019
AFFX-BioC-3_at
1453.70000
P
0.00015
AFFX-BioDn-5_at
1949.50000
P
0.00005
AFFX-BioDn-3_at
9716.90000
P
0.00010
AFFX-CreX-5_at
16183.80000
P
0.00004
AFFX-CreX-3_at
31493.70000
P
0.00004
AFFX-DapX-5_at
44.70000
A
0.18513
AFFX-DapX-M_at
75.40000
A
0.20573
AFFX-DapX-3_at
13.90000
A
0.76094
AFFX-LysX-5_at
17.30000
A
0.73717
AFFX-LysX-M_at
13.10000
A
0.64555
AFFX-LysX-3_at
11.50000
A
0.42596
AFFX-PheX-5_at
5.70000
A
0.95352
AFFX-PheX-M_at
20.00000
A
0.84327
AFFX-PheX-3_at
50.60000
A
0.39692
AFFX-ThrX-5_at
21.70000
A
0.92200
AFFX-ThrX-M_at
54.60000
A
0.58862
22690 701 Kbytes .Supplementary file Size Download File type/resource GSM40059.CEL.gz
3.3 Mb
(ftp) (http) CEL
