GEO help: Mouse over screen elements for information.
Status
Public on Jan 27, 2006
Title
MGSKO, PR03M006v0
Sample type
RNA
Source name
medial gastrocnemius
Organism
Mus musculus Extracted molecule
total RNA
Description
Medial gastrocnemius removed from 3-month old muscle glycogen synthase WT or knockout mouse. RNA was extracted using GibcoBRL TRIzol Reagent and a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Submission date
Jan 27, 2005
Last update date
May 29, 2005
Contact name
Peter Roach
E-mail(s)
proach@iupui.edu Phone
317-274-1583
Organization name
IU School of Medicine
Department
Street address
City
Indianapolis
State/province
IN
ZIP/Postal code
46202
Country
USA
Platform ID
GPL339 Series (1)
GSE2198 Comparison of transcripts from the anterior tibialis, gastrocnemius, and liver of glycogen synthase WT, GSL30 or KO mice
Data table header descriptions ID_REF
VALUE signal, a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present(P), absent(A), marginal(M), or no call(NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
477.60000
P
0.00141
AFFX-BioB-M_at
730.30000
P
0.00034
AFFX-BioB-3_at
366.30000
P
0.00202
AFFX-BioC-5_at
1462.90000
P
0.00009
AFFX-BioC-3_at
1158.70000
P
0.00008
AFFX-BioDn-5_at
1258.70000
P
0.00007
AFFX-BioDn-3_at
6958.60000
P
0.00011
AFFX-CreX-5_at
11350.00000
P
0.00004
AFFX-CreX-3_at
24185.50000
P
0.00004
AFFX-DapX-5_at
32.80000
A
0.28774
AFFX-DapX-M_at
41.40000
A
0.17530
AFFX-DapX-3_at
6.50000
A
0.93707
AFFX-LysX-5_at
3.50000
A
0.90433
AFFX-LysX-M_at
7.90000
A
0.72485
AFFX-LysX-3_at
7.40000
A
0.65933
AFFX-PheX-5_at
3.40000
A
0.93232
AFFX-PheX-M_at
4.20000
A
0.97388
AFFX-PheX-3_at
39.10000
A
0.36843
AFFX-ThrX-5_at
16.50000
A
0.71225
AFFX-ThrX-M_at
38.10000
A
0.39692
22690 700 Kbytes .Supplementary file Size Download File type/resource GSM40077.CEL.gz
3.5 Mb
(ftp) (http) CEL
