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Status
Public on Jan 27, 2006
Title
WT, PR04M003v0
Sample type
RNA
Source name
medial gastrocnemius
Organism
Mus musculus
Extracted molecule
total RNA
Description
Medial gastrocnemius removed from 8-month old muscle glycogen synthase WT or overexpressing mouse. RNA was extracted using GibcoBRL TRIzol Reagent and a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Submission date
Jan 27, 2005
Last update date
May 29, 2005
Contact name
Peter Roach
E-mail(s)
proach@iupui.edu
Phone
317-274-1583
Organization name
IU School of Medicine
Department
Street address
City
Indianapolis
State/province
IN
ZIP/Postal code
46202
Country
USA
Platform ID
GPL339
Series (1)
GSE2198
Comparison of transcripts from the anterior tibialis, gastrocnemius, and liver of glycogen synthase WT, GSL30 or KO mice
Data table header descriptions
ID_REF
VALUE
signal, a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present(P), absent(A), marginal(M), or no call(NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
598.10000
P
0.00202
AFFX-BioB-M_at
648.80000
P
0.00044
AFFX-BioB-3_at
287.00000
P
0.00556
AFFX-BioC-5_at
1135.30000
P
0.00009
AFFX-BioC-3_at
836.20000
P
0.00012
AFFX-BioDn-5_at
813.70000
P
0.00011
AFFX-BioDn-3_at
6326.20000
P
0.00029
AFFX-CreX-5_at
8984.30000
P
0.00004
AFFX-CreX-3_at
16535.30000
P
0.00004
AFFX-DapX-5_at
66.10000
A
0.17532
AFFX-DapX-M_at
83.30000
M
0.06292
AFFX-DapX-3_at
11.70000
A
0.94578
AFFX-LysX-5_at
23.10000
A
0.50000
AFFX-LysX-M_at
103.90000
A
0.16586
AFFX-LysX-3_at
40.60000
A
0.23906
AFFX-PheX-5_at
7.00000
A
0.91640
AFFX-PheX-M_at
9.40000
A
0.84326
AFFX-PheX-3_at
83.50000
A
0.31372
AFFX-ThrX-5_at
15.50000
A
0.71225
AFFX-ThrX-M_at
14.70000
A
0.72485
Total number of rows: 22690 Table truncated, full table size 702 Kbytes .Supplementary file
Size
Download
File type/resource
GSM40082.CEL.gz
3.5 Mb
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CEL