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Sample GSM40082 Query DataSets for GSM40082
Status Public on Jan 27, 2006
Title WT, PR04M003v0
Sample type RNA
 
Source name medial gastrocnemius
Organism Mus musculus
Extracted molecule total RNA
 
Description Medial gastrocnemius removed from 8-month old muscle glycogen synthase WT or overexpressing mouse. RNA was extracted using GibcoBRL TRIzol Reagent and a Quiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
 
Submission date Jan 27, 2005
Last update date May 29, 2005
Contact name Peter Roach
E-mail(s) proach@iupui.edu
Phone 317-274-1583
Organization name IU School of Medicine
Department
Street address
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL339
Series (1)
GSE2198 Comparison of transcripts from the anterior tibialis, gastrocnemius, and liver of glycogen synthase WT, GSL30 or KO mice

Data table header descriptions
ID_REF
VALUE signal, a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present(P), absent(A), marginal(M), or no call(NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 598.10000 P 0.00202
AFFX-BioB-M_at 648.80000 P 0.00044
AFFX-BioB-3_at 287.00000 P 0.00556
AFFX-BioC-5_at 1135.30000 P 0.00009
AFFX-BioC-3_at 836.20000 P 0.00012
AFFX-BioDn-5_at 813.70000 P 0.00011
AFFX-BioDn-3_at 6326.20000 P 0.00029
AFFX-CreX-5_at 8984.30000 P 0.00004
AFFX-CreX-3_at 16535.30000 P 0.00004
AFFX-DapX-5_at 66.10000 A 0.17532
AFFX-DapX-M_at 83.30000 M 0.06292
AFFX-DapX-3_at 11.70000 A 0.94578
AFFX-LysX-5_at 23.10000 A 0.50000
AFFX-LysX-M_at 103.90000 A 0.16586
AFFX-LysX-3_at 40.60000 A 0.23906
AFFX-PheX-5_at 7.00000 A 0.91640
AFFX-PheX-M_at 9.40000 A 0.84326
AFFX-PheX-3_at 83.50000 A 0.31372
AFFX-ThrX-5_at 15.50000 A 0.71225
AFFX-ThrX-M_at 14.70000 A 0.72485

Total number of rows: 22690

Table truncated, full table size 702 Kbytes.




Supplementary file Size Download File type/resource
GSM40082.CEL.gz 3.5 Mb (ftp)(http) CEL

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