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GEO accession:
Sample GSM401531
Query DataSets for GSM401531
Status
Public on May 12, 2009
Title
control, biological rep1
Sample type
RNA
Source name
Left ventricle
Organism
Canis lupus familiaris
Characteristics
tissue: heart, left ventricle
age: 12yr
gender: male
breed: Labrador retriever
Treatment protocol
tissue frozen in liq N2 was used
Growth protocol
Not applicable
Extracted molecule
total RNA
Extraction protocol
Qiagen RNEasy with on-column DNAse
Label
biotin
Label protocol
Std Affymetrix 1 cycle
Hybridization protocol
Std Affymetrix 1 cycle
Scan protocol
Std Affymetrix 1 cycle
Description
Gene expression data from control tissue
Data processing
MAS5&GCRMA
Submission date
May 11, 2009
Last update date
May 11, 2009
Contact name
Sridar V Chittur
E-mail(s)
schittur@albany.edu
Phone
518-591-7215
Organization name
SUNY-University at Albany
Department
Center for Functional Genomics
Lab
Microarray Core
Street address
One Discovery Drive, CRC 342G
City
Rensselaer
State/province
NY
ZIP/Postal code
12144
Country
USA
Platform ID
GPL3738
Series (1)
GSE16049
Expression in myocardial tissues of Great Dane dogs with cardiomyopathy
Data table header descriptions
ID_REF
VALUE
GCRMA normalized signal
Data table
ID_REF
VALUE
AFFX-BioB-5_at
-0.056792736
AFFX-BioB-M_at
-0.08207703
AFFX-BioB-3_at
-0.2968235
AFFX-BioC-5_at
0.020758629
AFFX-BioC-3_at
-0.019824028
AFFX-BioDn-5_at
-0.07716465
AFFX-BioDn-3_at
-0.058577538
AFFX-CreX-5_at
-0.13069439
AFFX-CreX-3_at
0.013103485
AFFX-DapX-5_at
0.18507004
AFFX-DapX-M_at
0.09130287
AFFX-DapX-3_at
0.055321693
AFFX-LysX-5_at
-0.042804956
AFFX-LysX-M_at
-0.012282372
AFFX-LysX-3_at
-0.1453247
AFFX-PheX-5_at
-0.01573801
AFFX-PheX-M_at
-0.02950573
AFFX-PheX-3_at
-0.14433622
AFFX-ThrX-5_at
0.00704813
AFFX-ThrX-M_at
-0.013039112
Total number of rows:
43035
Table truncated, full table size
1336 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM401531.CEL.gz
3.7 Mb
(ftp)
(http)
CEL
GSM401531.CHP.gz
232.4 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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