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Sample GSM4048867 Query DataSets for GSM4048867
Status Public on Nov 22, 2019
Title Sample33_602752: D00000000205715_DAY 1_Tofacitinib
Sample type protein
 
Source name Blood_DAY 1_Tofacitinib
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 27.4
pasi.baseline: 27.4
pasi.week4: 9.6
pasi.week12: 2.8
tag: 90
pasi75.response: R
age: 54
gender: F
platesimple: Plate1
plate: Plate1_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 7.027313294
Protein_102 9.759629588
Protein_103 3.234211526
Protein_105 7.784127777
Protein_106 7.163144799
Protein_107 6.18711149
Protein_108 5.195502586
Protein_109 9.389739628
Protein_110 9.205791236
Protein_111 4.830485849
Protein_112 5.133621486
Protein_113 3.24723612
Protein_114 4.104612502
Protein_115 9.459024375
Protein_116 5.020786576
Protein_117 4.651405629
Protein_118 2.695846854
Protein_120 7.188026635
Protein_121 5.913372315
Protein_122 5.771626356

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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