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Sample GSM4048990 Query DataSets for GSM4048990
Status Public on Nov 22, 2019
Title Sample76_609352: D00000000205976_WEEK 4_Tofacitinib
Sample type protein
 
Source name Blood_WEEK 4_Tofacitinib
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 2.4
pasi.baseline: 12.7
pasi.week4: 2.4
pasi.week12: 1.2
tag: 91
pasi75.response: R
age: 50
gender: M
platesimple: Plate2
plate: Plate2_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 6.749023528
Protein_102 9.955296617
Protein_103 4.288318118
Protein_105 6.748086149
Protein_106 8.176079666
Protein_107 7.16647487
Protein_108 5.163758825
Protein_109 8.213488692
Protein_110 9.552929452
Protein_111 4.38577039
Protein_112 4.546687425
Protein_113 3.815264041
Protein_114 4.211801373
Protein_115 9.556241848
Protein_116 5.212756086
Protein_117 5.356804948
Protein_118 3.555458092
Protein_120 8.180383254
Protein_121 5.968997343
Protein_122 6.559519578

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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