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Sample GSM4048994 Query DataSets for GSM4048994
Status Public on Nov 22, 2019
Title Sample80_603056: D00000000205912_WEEK 4_Etanercept
Sample type protein
 
Source name Blood_WEEK 4_Etanercept
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 11
pasi.baseline: 22.8
pasi.week4: 11
pasi.week12: 12.8
tag: 44
pasi75.response: NR
age: 50
gender: F
platesimple: Plate2
plate: Plate2_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 7.460546959
Protein_102 10.67240984
Protein_103 5.572679689
Protein_105 10.05913715
Protein_106 8.544271414
Protein_107 7.652087149
Protein_108 6.864457252
Protein_109 11.96909364
Protein_110 10.74955438
Protein_111 6.637242252
Protein_112 6.763355347
Protein_113 5.316732213
Protein_114 5.242730424
Protein_115 11.01477812
Protein_116 5.631182123
Protein_117 5.258872972
Protein_118 4.253172645
Protein_120 8.750669569
Protein_121 5.780428472
Protein_122 6.958449601

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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