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Sample GSM4049032 Query DataSets for GSM4049032
Status Public on Nov 22, 2019
Title Sample24_597890: D00000000206046_DAY 1_Tofacitinib
Sample type protein
 
Source name Blood_DAY 1_Tofacitinib
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 16.2
pasi.baseline: 16.2
pasi.week4: 12.6
pasi.week12: 2
tag: 88
pasi75.response: R
age: 47
gender: F
platesimple: Plate3
plate: Plate3_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 6.706556013
Protein_102 10.35058747
Protein_103 4.777710437
Protein_105 8.918629541
Protein_106 7.829286789
Protein_107 6.692569724
Protein_108 5.145737242
Protein_109 11.18012168
Protein_110 9.659712775
Protein_111 7.336828922
Protein_112 5.832262615
Protein_113 4.543107907
Protein_114 4.115445002
Protein_115 10.18136321
Protein_116 4.33879748
Protein_117 4.342585272
Protein_118 3.212102624
Protein_120 8.042073932
Protein_121 5.244988148
Protein_122 6.02603727

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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