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Sample GSM4049037 Query DataSets for GSM4049037
Status Public on Nov 22, 2019
Title Sample29_600356: D00000000206042_DAY 1_Etanercept
Sample type protein
 
Source name Blood_DAY 1_Etanercept
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 23.5
pasi.baseline: 23.5
pasi.week4: 8
pasi.week12: 3.6
tag: 85
pasi75.response: R
age: 33
gender: M
platesimple: Plate3
plate: Plate3_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 6.050450025
Protein_102 10.00955581
Protein_103 5.164517259
Protein_105 9.692507858
Protein_106 7.514369896
Protein_107 7.152065706
Protein_108 5.768095357
Protein_109 10.66595909
Protein_110 9.708067987
Protein_111 6.447233196
Protein_112 4.831048559
Protein_113 4.058224309
Protein_114 3.607540406
Protein_115 10.61589423
Protein_116 5.233215721
Protein_117 4.851093058
Protein_118 3.845058127
Protein_120 8.092068473
Protein_121 5.54870846
Protein_122 6.720714299

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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