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Sample GSM4049117 Query DataSets for GSM4049117
Status Public on Nov 22, 2019
Title Sample26_602774: D00000000206499_WEEK 4_Tofacitinib
Sample type protein
 
Source name Blood_WEEK 4_Tofacitinib
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 3.9
pasi.baseline: 13.2
pasi.week4: 3.9
pasi.week12: 2.7
tag: 80
pasi75.response: R
age: 48
gender: M
platesimple: Plate4
plate: Plate4_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 5.064242862
Protein_102 9.532833796
Protein_103 4.976451408
Protein_105 5.646202793
Protein_106 6.44401167
Protein_107 5.706739514
Protein_108 3.848650834
Protein_109 8.572438832
Protein_110 8.12071746
Protein_111 2.406757473
Protein_112 4.952330829
Protein_113 3.381487111
Protein_114 3.352989447
Protein_115 9.244318794
Protein_116 3.709884829
Protein_117 4.021838427
Protein_118 1.906633121
Protein_120 6.842862298
Protein_121 4.27227913
Protein_122 5.586962709

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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