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Sample GSM4049146 Query DataSets for GSM4049146
Status Public on Nov 22, 2019
Title Sample58_609428: D00000000206517_WEEK 4_Tofacitinib
Sample type protein
 
Source name Blood_WEEK 4_Tofacitinib
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 8
pasi.baseline: 21.4
pasi.week4: 8
pasi.week12: 4.8
tag: 78
pasi75.response: R
age: 28
gender: M
platesimple: Plate4
plate: Plate4_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 5.711933507
Protein_102 9.817016871
Protein_103 4.657526161
Protein_105 8.418474027
Protein_106 6.922359902
Protein_107 6.225656334
Protein_108 4.981688083
Protein_109 10.43810173
Protein_110 9.073609913
Protein_111 4.654467061
Protein_112 4.351825104
Protein_113 6.005254662
Protein_114 3.570191081
Protein_115 9.637570079
Protein_116 4.00630745
Protein_117 4.162671953
Protein_118 2.632574934
Protein_120 7.005990896
Protein_121 4.76793604
Protein_122 5.918258139

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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