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Sample GSM4049154 Query DataSets for GSM4049154
Status Public on Nov 22, 2019
Title Sample67_609712: D00000000206320_DAY 1_Etanercept
Sample type protein
 
Source name Blood_DAY 1_Etanercept
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 15.9
pasi.baseline: 15.9
pasi.week4: 7.2
pasi.week12: 1.4
tag: 91
pasi75.response: R
age: 51
gender: F
platesimple: Plate4
plate: Plate4_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 5.413723614
Protein_102 10.08100032
Protein_103 -0.410822755
Protein_105 7.535874295
Protein_106 6.481642795
Protein_107 5.970532593
Protein_108 5.213494349
Protein_109 9.600559594
Protein_110 9.178418396
Protein_111 4.038749897
Protein_112 4.329455358
Protein_113 3.264426337
Protein_114 3.141718562
Protein_115 8.995055601
Protein_116 3.874262879
Protein_117 4.240013841
Protein_118 2.210447016
Protein_120 7.097781658
Protein_121 4.624002538
Protein_122 5.852366872

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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