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Sample GSM4049251 Query DataSets for GSM4049251
Status Public on Nov 22, 2019
Title Sample79_601832: D00000000206714_WEEK 4_Etanercept
Sample type protein
 
Source name Blood_WEEK 4_Etanercept
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 7.1
pasi.baseline: 19.3
pasi.week4: 7.1
pasi.week12: 8
tag: 59
pasi75.response: NR
age: 42
gender: F
platesimple: Plate5
plate: Plate5_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 6.708285697
Protein_102 11.90711174
Protein_103 5.584070451
Protein_105 6.042605461
Protein_106 8.003056393
Protein_107 7.702558681
Protein_108 5.64443938
Protein_109 7.224530351
Protein_110 9.973236169
Protein_111 4.564112719
Protein_112 5.98301521
Protein_113 5.884305879
Protein_114 5.734530381
Protein_115 10.49952445
Protein_116 5.234322813
Protein_117 5.821648721
Protein_118 3.594785335
Protein_120 9.07394206
Protein_121 5.288424427
Protein_122 7.054924686

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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