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Sample GSM4049255 Query DataSets for GSM4049255
Status Public on Nov 22, 2019
Title Sample83_603188: D00000000206561_WEEK 4_Etanercept
Sample type protein
 
Source name Blood_WEEK 4_Etanercept
Organism Homo sapiens
Characteristics visit: WEEK 4
treatment: Etanercept 50 mg BIW
treatmentshort: Etanercept
pasi: 17.4
pasi.baseline: 23.4
pasi.week4: 17.4
pasi.week12: 7.4
tag: 68
pasi75.response: NR
age: 29
gender: M
platesimple: Plate5
plate: Plate5_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 7.005006205
Protein_102 11.41001738
Protein_103 4.823396887
Protein_105 8.392455693
Protein_106 7.378525766
Protein_107 7.001653565
Protein_108 6.344104192
Protein_109 10.55964635
Protein_110 10.18762901
Protein_111 6.161755769
Protein_112 5.293301388
Protein_113 3.610521164
Protein_114 4.606994162
Protein_115 10.83437546
Protein_116 5.315373613
Protein_117 5.103696827
Protein_118 3.38403745
Protein_120 8.225384438
Protein_121 5.675658599
Protein_122 6.262434319

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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