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Sample GSM4049274 Query DataSets for GSM4049274
Status Public on Nov 22, 2019
Title Sample9_596456: D00000000207008_DAY 1_Tofacitinib
Sample type protein
 
Source name Blood_DAY 1_Tofacitinib
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 21.6
pasi.baseline: 21.6
pasi.week4: 12.2
pasi.week12: 2.7
tag: 88
pasi75.response: R
age: 53
gender: M
platesimple: Plate6
plate: Plate6Repeat_CVD_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27151
Series (2)
GSE136431 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (CVD data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 7.489641817
Protein_102 9.840046197
Protein_103 5.15190133
Protein_105 8.450174282
Protein_106 7.791497333
Protein_107 6.365123372
Protein_108 5.065496813
Protein_109 11.20260368
Protein_110 9.572626167
Protein_111 5.975951797
Protein_112 5.203424131
Protein_113 4.740315153
Protein_114 3.949269755
Protein_115 11.06160597
Protein_116 5.111329687
Protein_117 4.436491149
Protein_118 2.894290243
Protein_120 7.567309707
Protein_121 5.045226179
Protein_122 5.905215566

Total number of rows: 91

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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