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Sample GSM4049387 Query DataSets for GSM4049387
Status Public on Nov 22, 2019
Title Sample8_598830: D00000000205582_DAY 1_Tofacitinib
Sample type protein
 
Source name Blood_DAY 1_Tofacitinib
Organism Homo sapiens
Characteristics visit: DAY 1
treatment: CP-690,550 10 mg BID
treatmentshort: Tofacitinib
pasi: 15.8
pasi.baseline: 15.8
pasi.week4: 0.3
pasi.week12: 0.2
tag: 99
pasi75.response: R
age: 61
gender: F
platesimple: Plate1
plate: Plate1_INF_A3921080_LOD
Treatment protocol Patients were treated with either tofacitinib 10mg QD or etanercept 50mg BIW as described in ClinicalTrials.gov: NCT01241591 and Bachelez et al., 2015
Extracted molecule protein
Extraction protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Label oligonucleotide-labeled antibody
Label protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
 
Hybridization protocol see manufacture protocol https://www.olink.com/content/uploads/2017/11/0935-v1.9.4-Proseek-Multiplex-User-Manual_final.pdf
Scan protocol Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
Data processing Detection and quantification of the resulting DNA sequences was performed using microfluidic real-time quantitative PCR chip (96.96, Dynamic Array IFC, Fluidigm Biomark, South San Francisco, CA).
 
Submission date Aug 27, 2019
Last update date Nov 22, 2019
Contact name Lewis Elwood Tomalin
E-mail(s) l.tomalin1987@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Department Population Health Science & Policy
Street address 303 East 71st Street, Apt1B
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platform ID GPL27152
Series (2)
GSE136434 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept (INF data set)
GSE136435 Early quantification of systemic inflammatory (INF) and cardiovascular disease (CVD) proteins predicts long-term treatment response to Tofacitinib and Etanercept

Data table header descriptions
ID_REF
VALUE Proteomic measurements were presented as arbitrary units of concentration (log2-transformed).

Data table
ID_REF VALUE
Protein_101 7.105231331
Protein_102 11.03254787
Protein_103 1.728887315
Protein_105 2.530483402
Protein_106 1.820613906
Protein_107 2.792354898
Protein_108 5.575914889
Protein_109 3.772194354
Protein_110 9.78739888
Protein_111 7.08378374
Protein_112 9.645675878
Protein_113 1.487772339
Protein_114 2.368348055
Protein_115 10.28667312
Protein_116 1.037923833
Protein_117 6.249937969
Protein_118 0.175658351
Protein_120 8.014446378
Protein_121 0.235451983
Protein_122 6.169656355

Total number of rows: 92

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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