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Sample GSM406189 Query DataSets for GSM406189
Status Public on May 21, 2009
Title Placebo LC-Ovx1
Sample type RNA
 
Source name Laser captured serotonin neurons
Organism Macaca mulatta
Characteristics gender: Female
cell type: serotonin neuron
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia. Serotonin neurons were laser captured from sections of the dorsal raphe nucleus.
Extracted molecule total RNA
Extraction protocol RNA extraction with Qiagen RNAeasy microkit
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description n/a
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16169 Effect of Ovarian Hormone on Gene Expression in Laser Captured Serotonin Neurons from Monkeys

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3236.56 P 6.02111e-05
AFFX-BioB-M_at 5386.16 P 4.42873e-05
AFFX-BioB-3_at 3098.85 P 4.42873e-05
AFFX-BioC-5_at 9481.48 P 4.42873e-05
AFFX-BioC-3_at 10005.7 P 4.42873e-05
AFFX-BioDn-5_at 27045.3 P 4.42873e-05
AFFX-BioDn-3_at 36381 P 4.42873e-05
AFFX-CreX-5_at 110722 P 5.16732e-05
AFFX-CreX-3_at 122929 P 4.42873e-05
AFFX-DapX-5_at 126.923 A 0.216524
AFFX-DapX-M_at 258.097 A 0.425962
AFFX-DapX-3_at 33.1313 A 0.672921
AFFX-LysX-5_at 69.2434 A 0.672935
AFFX-LysX-M_at 31.4425 A 0.843268
AFFX-LysX-3_at 133.015 A 0.0780018
AFFX-PheX-5_at 116.41 A 0.165861
AFFX-PheX-M_at 19.5976 A 0.916408
AFFX-PheX-3_at 44.1129 A 0.772364
AFFX-ThrX-5_at 16.8633 A 0.824672
AFFX-ThrX-M_at 38.9082 A 0.544587

Total number of rows: 52865

Table truncated, full table size 2093 Kbytes.




Supplementary file Size Download File type/resource
GSM406189.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM406189.CHP.gz 295.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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