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Sample GSM406190 Query DataSets for GSM406190
Status Public on May 21, 2009
Title Placebo LC-Ovx2
Sample type RNA
 
Source name Laser captured serotonin neurons
Organism Macaca mulatta
Characteristics gender: Female
cell type: serotonin neuron
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia. Serotonin neurons were laser captured from sections of the dorsal raphe nucleus.
Extracted molecule total RNA
Extraction protocol RNA extraction with Qiagen RNAeasy microkit
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description n/a
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16169 Effect of Ovarian Hormone on Gene Expression in Laser Captured Serotonin Neurons from Monkeys

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4974.27 P 8.14279e-05
AFFX-BioB-M_at 8665.08 P 5.16732e-05
AFFX-BioB-3_at 5550.45 P 4.42873e-05
AFFX-BioC-5_at 5541.98 P 5.16732e-05
AFFX-BioC-3_at 4783.35 P 5.16732e-05
AFFX-BioDn-5_at 46413.1 P 4.42873e-05
AFFX-BioDn-3_at 61559.3 P 4.42873e-05
AFFX-CreX-5_at 141632 P 4.42873e-05
AFFX-CreX-3_at 158415 P 4.42873e-05
AFFX-DapX-5_at 78.756 A 0.41138
AFFX-DapX-M_at 37.8784 A 0.814869
AFFX-DapX-3_at 12.5796 A 0.897835
AFFX-LysX-5_at 73.6318 A 0.300606
AFFX-LysX-M_at 117.713 A 0.5
AFFX-LysX-3_at 116.743 A 0.287743
AFFX-PheX-5_at 32.4771 A 0.712257
AFFX-PheX-M_at 24.2969 A 0.941556
AFFX-PheX-3_at 127.598 A 0.48511
AFFX-ThrX-5_at 36.0498 A 0.814869
AFFX-ThrX-M_at 156.821 A 0.250796

Total number of rows: 52865

Table truncated, full table size 2093 Kbytes.




Supplementary file Size Download File type/resource
GSM406190.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM406190.CHP.gz 297.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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