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Sample GSM406226 Query DataSets for GSM406226
Status Public on May 21, 2009
Title Placebo OVX1
Sample type RNA
 
Source name Dorsal raphe block
Organism Macaca mulatta
Characteristics gender: Female
tissue: dorsal raphe nucleus
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia
Extracted molecule total RNA
Extraction protocol RNA extraction with Trizol followed by Qiagen RNAeasy columns
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description OVX1
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16172 Effect of Ovarian Hormone on Gene Expression in Rhesus Dorsal Raphe Nucleus with Rhesus Affymetrix Chip

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 168.937 P 0.0032123
AFFX-BioB-M_at 177.956 P 0.000445901
AFFX-BioB-3_at 103.818 P 0.0219019
AFFX-BioC-5_at 498.586 P 0.000258358
AFFX-BioC-3_at 321.149 P 0.000169227
AFFX-BioDn-5_at 617.393 P 5.16732e-05
AFFX-BioDn-3_at 3771.44 P 0.000169227
AFFX-CreX-5_at 6442.81 P 5.16732e-05
AFFX-CreX-3_at 6310.46 P 4.42873e-05
AFFX-DapX-5_at 17.1802 A 0.0676785
AFFX-DapX-M_at 20.4997 A 0.275146
AFFX-DapX-3_at 12.1026 A 0.772364
AFFX-LysX-5_at 2.25425 A 0.794268
AFFX-LysX-M_at 28.897 A 0.58862
AFFX-LysX-3_at 5.53122 A 0.440646
AFFX-PheX-5_at 2.60496 A 0.772364
AFFX-PheX-M_at 4.34665 A 0.843268
AFFX-PheX-3_at 12.0684 A 0.737173
AFFX-ThrX-5_at 13.8121 A 0.645547
AFFX-ThrX-M_at 15.278 A 0.41138

Total number of rows: 52865

Table truncated, full table size 2126 Kbytes.




Supplementary file Size Download File type/resource
GSM406226.CEL.gz 5.8 Mb (ftp)(http) CEL
GSM406226.CHP.gz 291.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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