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Sample GSM406231 Query DataSets for GSM406231
Status Public on May 21, 2009
Title Estrogen E3
Sample type RNA
 
Source name Dorsal raphe block
Organism Macaca mulatta
Characteristics gender: Female
tissue: dorsal raphe nucleus
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia
Extracted molecule total RNA
Extraction protocol RNA extraction with Trizol followed by Qiagen RNAeasy columns
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description E3
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16172 Effect of Ovarian Hormone on Gene Expression in Rhesus Dorsal Raphe Nucleus with Rhesus Affymetrix Chip

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 99.108 P 0.00499819
AFFX-BioB-M_at 92.1935 P 0.00110197
AFFX-BioB-3_at 81.5487 P 0.00255552
AFFX-BioC-5_at 377.215 P 0.000340305
AFFX-BioC-3_at 352.022 P 8.14279e-05
AFFX-BioDn-5_at 686.181 P 6.02111e-05
AFFX-BioDn-3_at 2038.32 P 0.000581214
AFFX-CreX-5_at 4614.9 P 5.16732e-05
AFFX-CreX-3_at 4822.04 P 4.42873e-05
AFFX-DapX-5_at 13.8356 A 0.116113
AFFX-DapX-M_at 11.5692 A 0.48511
AFFX-DapX-3_at 9.39177 A 0.794268
AFFX-LysX-5_at 7.14985 A 0.52976
AFFX-LysX-M_at 3.2276 A 0.631562
AFFX-LysX-3_at 7.01701 A 0.227636
AFFX-PheX-5_at 1.31161 A 0.834139
AFFX-PheX-M_at 2.77942 A 0.814869
AFFX-PheX-3_at 3.50429 A 0.916408
AFFX-ThrX-5_at 3.92583 A 0.783476
AFFX-ThrX-M_at 14.6411 A 0.39692

Total number of rows: 52865

Table truncated, full table size 2136 Kbytes.




Supplementary file Size Download File type/resource
GSM406231.CEL.gz 5.7 Mb (ftp)(http) CEL
GSM406231.CHP.gz 291.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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