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Sample GSM406236 Query DataSets for GSM406236
Status Public on May 21, 2009
Title Progesterone EP2
Sample type RNA
 
Source name Dorsal raphe block
Organism Macaca mulatta
Characteristics gender: Female
tissue: dorsal raphe nucleus
Treatment protocol Silastic capsules containing crystalline steroids were implanted subcutaneously in the periscapular area for one month prior to euthanasia
Extracted molecule total RNA
Extraction protocol RNA extraction with Trizol followed by Qiagen RNAeasy columns
Label Biotin
Label protocol Biotinylated Enzo kit
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description P2
Data processing GCOS1.0 software
 
Submission date May 20, 2009
Last update date May 20, 2009
Contact name Arubala P. Reddy
E-mail(s) reddya@ohsu.edu
Phone 503 690 5330
Fax 504 690 5384
Organization name Oregon Health and Sciences University
Department Oregon National Primate Research Center
Lab Reproductive sciences
Street address 505 NW 185th Ave
City Beaverton
State/province OR
ZIP/Postal code 97006
Country USA
 
Platform ID GPL3535
Series (1)
GSE16172 Effect of Ovarian Hormone on Gene Expression in Rhesus Dorsal Raphe Nucleus with Rhesus Affymetrix Chip

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 114.28 P 0.0044838
AFFX-BioB-M_at 134.484 P 0.0020226
AFFX-BioB-3_at 97.5201 P 0.0125468
AFFX-BioC-5_at 412.482 P 0.000258358
AFFX-BioC-3_at 373.625 P 5.16732e-05
AFFX-BioDn-5_at 720.626 P 5.16732e-05
AFFX-BioDn-3_at 2459.95 P 0.000509415
AFFX-CreX-5_at 5116.64 P 5.16732e-05
AFFX-CreX-3_at 6303.28 P 4.42873e-05
AFFX-DapX-5_at 11.9995 A 0.287743
AFFX-DapX-M_at 19.5354 A 0.300591
AFFX-DapX-3_at 19.6422 A 0.686277
AFFX-LysX-5_at 1.33233 A 0.932322
AFFX-LysX-M_at 33.6082 A 0.5
AFFX-LysX-3_at 9.75399 A 0.300606
AFFX-PheX-5_at 2.71033 A 0.868639
AFFX-PheX-M_at 1.56073 A 0.971543
AFFX-PheX-3_at 9.4346 A 0.868639
AFFX-ThrX-5_at 3.54144 A 0.891021
AFFX-ThrX-M_at 2.76421 A 0.843268

Total number of rows: 52865

Table truncated, full table size 2130 Kbytes.




Supplementary file Size Download File type/resource
GSM406236.CEL.gz 5.6 Mb (ftp)(http) CEL
GSM406236.CHP.gz 290.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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