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GEO accession:
Sample GSM410593
Query DataSets for GSM410593
Status
Public on May 30, 2009
Title
P13 neocortex 1
Sample type
RNA
Source name
wild type cortex
Organism
Mus musculus
Characteristics
strain: CD1
tissue: brain
brain region: cortex
developmental stage: P13
Extracted molecule
total RNA
Extraction protocol
Trizol Extraction.
Label
biotin
Label protocol
Affymetrix WT Sense Target Labeling Assay.
Hybridization protocol
Affymetrix WT Sense Target Labeling Assay.
Scan protocol
The scanning and image acquisition was done using Affymetrix GeneChip Operating Software (GCOS) v1.4. The scanner model is GeneChip Scanner 3000 7G.
Description
Expression analysis.
Data processing
Affymetrix Power Tools(Affymetrix); median normalization; PM-GCBG; iterPLIER.
Analysis was limited to core probe sets. Transcript assignments are based on genome build mm8 (NCBI Build 36).
Submission date
May 29, 2009
Last update date
May 29, 2009
Contact name
Sung Wook Chi
E-mail(s)
schi@rockefeller.edu
Organization name
Rockefeller Univ
Street address
1230 York Ave,
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL6096
Series (1)
GSE16338
P13 cortex RNA
Data table header descriptions
ID_REF
VALUE
Probeset signal values from Affymetrix Power Tools, using iterPLIER
Data table
ID_REF
VALUE
6848511
1764.91404
6864895
1643.10581
6766590
11.10455
6914045
29.24195
6963197
1640.57953
6766588
45.9961
6995964
298.52782
6766587
17.23778
6815739
2551.65571
6766586
267.05801
7012346
83.17528
6766585
87.4396
6848505
779.71618
6766584
44.60229
6848504
306.64683
6979576
38.86613
6995960
1694.50739
6766583
35.71026
6963191
93.51616
6979575
117.89343
Total number of rows:
23172
Table truncated, full table size
400 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM410593.CEL.gz
24.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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