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Sample GSM410827 Query DataSets for GSM410827
Status Public on Jul 29, 2009
Title synthetic_miRNAs_modban_amplified_rep2
Sample type SRA
 
Source name synthetic miRNAs
Organism Homo sapiens
Characteristics source: synthetic miRNAs
Extracted molecule total RNA
Extraction protocol Modban: The original protocol, as described by Lau et al. 2001, was followed.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description none
Data processing Sequencing reads were mapped to the reference set of miRNAs using SHRiMP. Reads with 3 or less mismatches were included in the further analysis.
 
Submission date Jun 01, 2009
Last update date Jun 11, 2013
Contact name Elzo de Wit
Phone +31 30 2121 800
Organization name Hubrecht Institute
Street address Uppsalalaan 8
City Utrecht
ZIP/Postal code 3584 CT
Country Netherlands
 
Platform ID GPL9115
Series (2)
GSE16373 Limitations and possibilities of small RNA digital gene expression profiling: synthetic miRNA replicates (Illumina)
GSE16374 Limitations and possibilities of small RNA digital gene expression profiling
Relations
BioSample SAMN02198700

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
hsa-miR-100 26065
hsa-miR-152 24821.5
hsa-miR-379 22627
hsa-miR-181b 21761
hsa-miR-509 21300
hsa-miR-431 19203
hsa-miR-10a 18900
hsa-miR-34c 18636
hsa-miR-7 18310
hsa-miR-21 17674
hsa-miR-506 17255
hsa-miR-542-3p 16838
hsa-miR-199a* 16453
hsa-miR-184 15809
hsa-miR-196b 15321.5
hsa-miR-380-5p 15298
hsa-miR-183 15005
hsa-miR-146b 14576
hsa-let-7c 14470.8333333333
hsa-miR-181a 14328

Total number of rows: 471

Table truncated, full table size 8 Kbytes.




Supplementary file Size Download File type/resource
GSM410827.fa.gz 19.1 Mb (ftp)(http) FA
Processed data included within Sample table
Raw data provided as supplementary file

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