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Sample GSM41248 Query DataSets for GSM41248
Status Public on Aug 01, 2006
Title Microvascular endothelial cells cultured on fibronectin and exposed to sustained low shear stress.
Sample type SAGE
Anchor NlaIII
Tag Count 31141
Tag Length 10
 
Source name Pulmonary microvascular endothelial cells in culture.
Organism Homo sapiens
Extracted molecule total RNA
 
Description Pulmonary microvascular endothelial cells were cultured on the inner surface of fibers (each 700 µm inner diameter) coated with native-fibronectin in hollow-fiber cartridges (FiberCell Systems, Inc.). Duration of shear stress application was 10 days. Shear stress was steady at 0.7 dyne/cm2.
Keywords = microvascular endothelial cells
Keywords = chronic shear stress
 
Submission date Feb 04, 2005
Last update date Nov 19, 2008
Contact name Gürkan Sengoelge
E-mail(s) guerkan.sengoelge@meduniwien.ac.at
Phone ++43-1-40400-2125
Fax ++43-1-40400-4392
Organization name Medical University Vienna
Department Medicine/Division of Nephrology
Street address Waehringer Guertel 18-20
City Vienna
ZIP/Postal code A-1090
Country Austria
 
Platform ID GPL4
Series (1)
GSE2424 Effect of high or low chronic shear stress on microvascular endothelial cells cultured on native- versus AGE-fibronectin

Data table header descriptions
TAG 10 mer sequence serving to identify the tag sequence which is being counted. The content of this column is unique across rows;
COUNT The tag count column identifies the number of tags counted by the tag extraction algorithm.
TPM tags per million

Data table
TAG COUNT TPM
TTGGGGTTTC 231 7417.87
TGTGTTGAGA 221 7096.75
CAAGGGTAAG 199 6390.29
TAGGTTGTCT 191 6133.39
TTGGTGAAGG 174 5587.49
TCCAAATCGA 164 5266.37
CCCATCGTCC 162 5202.15
TTGGTCCTCT 159 5105.81
ATTTAGCAAG 154 4945.25
TTTGCACCTT 138 4431.46
GGGCTGGGGT 137 4399.34
GAGGGAGTTT 136 4367.23
ACTTTTTCAA 134 4303.01
CCCTGGGTTC 119 3821.33
GCAGCCATCC 114 3660.77
GGATTTGGCC 113 3628.66
CTGGGTTAAT 110 3532.32
TGCACGTTTT 102 3275.42
GCCGTGTCCG 99 3179.09
CCTAGCTGGA 98 3146.98

Total number of rows: 12083

Table truncated, full table size 226 Kbytes.




Supplementary data files not provided

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