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Sample GSM414510 Query DataSets for GSM414510
Status Public on Jun 10, 2009
Title Sample_Banshee_1
Sample type RNA
 
Source name Sample_Banshee
Organism Mus musculus
Characteristics cell line: G1ME
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description GATA-1-deficient megakaryocytic cells G1ME were transduced with Banshee control vector or Banshee vector producing short hairpin RNA specific to mouse GATA-2 gene. The transduced cells were sorted based on GFP+ on the next day. Use Qiagen RNeasy Mini Kit.
Data processing The data was preprocessed by Bioconductor lumi package (version 1.7.18). It was vst transformed and quantile normalized
 
Submission date Jun 08, 2009
Last update date Jun 09, 2009
Contact name Zan Huang
E-mail(s) z-huang@northwestern.edu
Organization name Northwestern University
Department Med
Street address 303 E Superior St
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6481
Series (1)
GSE16521 GATA-2 controls megakaryocyte proliferation

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
106940692 7.29276262545106 63.09389 1.671617 0.8178269 53
580022 7.3694890030021 74.50146 3.465651 0.1984385 41
2940601 8.83057971532295 504.8712 26.23862 0 30
103440070 7.34048906125376 70.24815 2.169335 0.3910215 45
102260551 10.0310966162708 1412.044 52.67673 0 48
102370333 8.87503804037521 524.7474 23.0195 0 45
105670398 10.9897475083823 2833.224 90.87489 0 53
102030278 7.38348471899045 76.60919 2.724267 0.129473 51
104670301 9.4520790963734 882.637 34.30054 0 41
106770632 7.35573096416473 72.45778 2.493596 0.2700065 40
101770605 7.37293200959111 75.04807 3.122397 0.1815224 43
102320338 7.35392945607766 72.20433 2.802996 0.2804164 44
102470519 7.30268488967455 64.63895 2.16527 0.741054 44
101940070 7.8505999909695 167.1569 7.217464 0 39
103710100 7.29893553873894 64.06985 2.104088 0.7644762 42
105720600 7.79596405217487 155.1207 6.160962 0 34
106840121 7.50293885467672 95.26695 3.577436 0 41
1240685 10.5397848332742 2054.975 95.27719 0 29
6450273 10.6839686102903 2269.057 113.9814 0 38
6020750 9.63451516681928 1017.865 27.24771 0 38

Total number of rows: 46643

Table truncated, full table size 2458 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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