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Sample GSM416759 Query DataSets for GSM416759
Status Public on Aug 25, 2009
Title DLD2
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: DLD2
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012261
BioSample SAMN00004414

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 580566
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 141413
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 129901
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 80760
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGT 71778
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 57475
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 41473
TAGCACCATTTGAAATCAGTGTTTCGTATGCCGTCT 37071
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 36023
CATTAACGCGGCCGCTCTACAATAGTGATCGTATGC 35966
TACCCTGTAGATCCGAATTTGTTCGTATGCCGTCTT 34535
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTTC 32285
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 28523
TTCAAGTAATCCAGGATAGGCTTCGTATGCCGTCTT 23615
TAATACTGCCGGGTAATGATGGATCGTATGCCGTCT 20951
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 20400
GCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGCT 19267
TAGCAGCACGTAAATATTGGCGTCGTATGCCGTCTT 14617
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCT 14377
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 13901

Total number of rows: 449905

Table truncated, full table size 17151 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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