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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 20, 2009 |
| Title |
HeLa-siWDR5-H3K4me3 |
| Sample type |
SRA |
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| Source name |
HeLa cell
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| Organism |
Homo sapiens |
| Characteristics |
cell type: HeLa cell
antibody: anti-H3K4me3 Ab
sirna: siWDR5
treatment: n/a
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| Treatment protocol |
Treatment protocol as described in Wang et al., 2009
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| Growth protocol |
Growth protocol as described in Wang et al., 2009
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extract protocol as described in Wang et al., 2009
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Description |
HeLa siWDR5 H3K4me3
ChIP-Seq, genomic DNA
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| Data processing |
Sequence reads were obtained and mapped to the human (March 2006, hg18) genomes using the Illumina Genome Analyzer Pipeline. More details as described in Wang et al., 2009
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| Submission date |
Jun 18, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Chongzhi Zang |
| Organization name |
University of Virginia
|
| Street address |
P. O. Box 800717
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| City |
Charlottesville |
| State/province |
VA |
| ZIP/Postal code |
22908 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE15735 |
Genome-wide mapping of HATs and HDACs in human CD4+ T cells |
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| Relations |
| SRA |
SRX017721 |
| BioSample |
SAMN00009896 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM418300_HeLa-siWDR5-H3K4me3-vstep.txt.gz |
4.0 Mb |
(ftp)(http) |
TXT |
| GSM418300_HeLa-siWDR5-H3K4me3.bed.gz |
28.5 Mb |
(ftp)(http) |
BED |
| GSM418300_group1_325genes.txt.gz |
3.1 Kb |
(ftp)(http) |
TXT |
| GSM418300_group2_409genes.txt.gz |
1.3 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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