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Sample GSM41859 Query DataSets for GSM41859
Status Public on Feb 10, 2006
Title R80A_0h:Blank_0h - mAdb ID 55193
Sample type RNA
 
Channel 1
Source name Blank_0h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_0h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 55193
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 0 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: none
treatment_time (hrs): 0
SAMPLE: R80A_0h:Blank_0h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.624 0.649 1 1 1 826 249 99 1981 1171 350 113 1487 0 -0.624
1174364_1 -0.002 0.998 1 1 2 4212 959 80 72 3995 804 86 55 0 -0.002
1175152_1 -0.015 0.990 1 1 3 616 410 94 1084 595 370 97 370 0 -0.015
1175940_1 -0.298 0.813 1 1 4 1600 453 95 418 1841 412 93 272 0 -0.298
1176716_1 -0.216 0.861 1 1 5 6618 1405 82 70 7250 1479 82 69 0 -0.216
1177504_1 0.114 1.082 1 1 6 3036 510 71 59 2666 429 79 50 0 0.114
1178580_1 0.396 1.316 1 1 7 14734 5088 90 88 10604 3381 96 69 0 0.396
1179356_1 -0.118 0.922 1 1 8 390 515 106 92 401 348 110 75 0 -0.118
1180144_1 0.212 1.158 1 1 9 5502 2065 97 1039 4495 1533 88 670 0 0.212
1180932_1 -0.285 0.821 1 1 10 519 278 87 450 585 238 88 379 0 -0.285
1181708_1 0.601 1.516 1 1 11 988 512 76 88 654 295 86 40 0 0.601
1182496_1 -0.852 0.554 1 1 12 189 104 84 93 267 88 88 47 0 -0.852
1183572_1 0.149 1.109 1 1 13 1830 610 103 124 1570 501 99 102 0 0.149
1184348_1 -0.292 0.817 1 1 14 346 227 129 3118 375 135 124 2321 0 -0.292
1185136_1 -0.038 0.974 1 1 15 186 149 87 101 190 117 94 58 0 -0.038
1185924_1 0.031 1.022 1 1 16 284 160 72 68 280 107 84 51 0 0.031
1186700_1 0.268 1.204 1 1 17 1811 506 67 42 1439 352 71 31 0 0.268
1187488_1 0.237 1.179 1 1 18 1133 385 56 35 931 242 68 23 0 0.237
1188564_1 0.317 1.246 1 1 19 8228 1655 55 34 6256 1538 61 26 0 0.317
1189340_1 0.136 1.098 1 1 20 823 389 60 39 718 234 62 28 0 0.136

Total number of rows: 21794

Table truncated, full table size 1452 Kbytes.




Supplementary data files not provided
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