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Sample GSM41862 Query DataSets for GSM41862
Status Public on Feb 10, 2006
Title R80A_4h:Blank_4h - mAdb ID 55196
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 55196
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: R80A_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.015 0.990 1 1 1 1945 770 197 154 2104 747 165 79 0 -0.015
1174364_1 0.117 1.084 1 1 2 7845 2158 216 163 7900 1665 174 79 0 0.117
1175152_1 0.066 1.047 1 1 3 1188 529 208 145 1190 406 162 70 0 0.066
1175940_1 0.127 1.092 1 1 4 1685 522 210 255 1652 383 169 157 0 0.127
1176716_1 0.040 1.028 1 1 5 11870 3612 215 317 12629 3802 177 163 0 0.040
1177504_1 0.823 1.769 1 1 6 2830 526 211 169 1804 275 178 101 0 0.823
1178580_1 0.175 1.129 1 1 7 5958 2664 200 156 5768 1809 167 99 0 0.175
1179356_1 0.794 1.734 1 1 8 542 236 193 129 378 169 157 114 0 0.794
1180144_1 0.576 1.491 1 1 9 3565 1317 185 106 2642 656 152 113 0 0.576
1180932_1 -0.755 0.593 1 1 10 578 258 197 108 860 242 154 73 0 -0.755
1181708_1 0.614 1.531 1 1 11 925 382 189 128 678 267 150 71 0 0.614
1182496_1 -1.535 0.345 1 1 12 304 150 178 144 553 237 152 77 0 -1.535
1183572_1 0.494 1.409 1 1 13 3228 856 175 139 2529 605 149 68 0 0.494
1184348_1 0.472 1.387 1 1 14 780 338 180 132 625 218 150 66 0 0.472
1185136_1 0.431 1.348 1 1 15 434 215 186 140 368 127 166 67 0 0.431
1185924_1 0.247 1.187 1 1 16 668 320 173 148 614 236 156 65 0 0.247
1186700_1 0.530 1.444 1 1 17 1896 599 170 131 1455 385 142 61 0 0.530
1187488_1 0.089 1.064 1 1 18 910 336 171 105 906 253 143 58 0 0.089
1188564_1 0.988 1.983 1 1 19 3927 1420 171 109 2228 728 148 57 0 0.988
1189340_1 0.153 1.112 1 1 20 2412 915 163 126 2364 743 142 71 0 0.153

Total number of rows: 21794

Table truncated, full table size 1504 Kbytes.




Supplementary data files not provided
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