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Sample GSM41863 Query DataSets for GSM41863
Status Public on Feb 10, 2006
Title R80A_6h:Blank_6h - mAdb ID 55197
Sample type RNA
 
Channel 1
Source name Blank_6h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_6h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 55197
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 6 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 6
SAMPLE: R80A_6h:Blank_6h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.761 0.590 1 1 1 750 210 63 47 1212 292 66 39 0 -0.761
1174364_1 0.232 1.174 1 1 2 4684 1451 63 50 3941 1107 68 46 0 0.232
1175152_1 -0.548 0.684 1 1 3 549 220 66 52 763 315 68 48 0 -0.548
1175940_1 -0.171 0.888 1 1 4 1249 309 66 327 1378 311 67 144 0 -0.171
1176716_1 -0.214 0.862 1 1 5 7860 1427 68 131 8967 1495 71 164 0 -0.214
1177504_1 0.494 1.408 1 1 6 3321 542 66 435 2347 442 72 1378 0 0.494
1178580_1 -0.110 0.927 1 1 7 5829 1981 63 54 6191 1531 67 38 0 -0.110
1179356_1 0.294 1.226 1 1 8 193 96 61 46 174 80 68 67 0 0.294
1180144_1 0.062 1.044 1 1 9 3591 919 64 43 3393 741 67 25 0 0.062
1180932_1 -0.832 0.562 1 1 10 331 186 60 32 541 164 66 30 0 -0.832
1181708_1 0.569 1.484 1 1 11 1159 370 60 37 795 231 66 27 0 0.569
1182496_1 -1.487 0.357 1 1 12 159 69 59 54 342 148 66 63 0 -1.487
1183572_1 0.204 1.152 1 1 13 1419 458 59 49 1228 354 66 27 0 0.204
1184348_1 -0.105 0.930 1 1 14 437 211 61 41 465 181 67 28 0 -0.105
1185136_1 0.474 1.389 1 1 15 279 136 73 53 220 84 74 26 0 0.474
1185924_1 -0.349 0.785 1 1 16 343 137 63 37 417 175 66 24 0 -0.349
1186700_1 0.173 1.127 1 1 17 1808 433 71 9213 1590 462 73 11440 0 0.173
1187488_1 0.873 1 1 18 692 342 81 12155 770 317 81 14717 -50 -0.196
1188564_1 0.692 1.616 1 1 19 6450 1440 67 4345 3962 1074 73 4012 0 0.692
1189340_1 -0.222 0.857 1 1 20 1404 491 64 35 1607 459 68 24 0 -0.222

Total number of rows: 21794

Table truncated, full table size 1457 Kbytes.




Supplementary data files not provided
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