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Sample GSM41864 Query DataSets for GSM41864
Status Public on Feb 10, 2006
Title R80A_8h:Blank_8h - mAdb ID 55198
Sample type RNA
 
Channel 1
Source name Blank_8h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_8h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 55198
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 8 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 8
SAMPLE: R80A_8h:Blank_8h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.608 0.656 1 1 1 1540 441 163 97 2340 543 123 51 0 -0.608
1174364_1 0.107 1.077 1 1 2 7881 2750 164 95 7697 2905 128 45 0 0.107
1175152_1 -0.538 0.689 1 1 3 1025 468 167 100 1444 432 128 47 0 -0.538
1175940_1 -0.059 0.960 1 1 4 1527 387 173 99 1615 333 125 45 0 -0.059
1176716_1 -0.055 0.963 1 1 5 11700 4326 181 97 12764 4271 128 41 0 -0.055
1177504_1 0.760 1.693 1 1 6 4034 597 182 87 2529 521 126 50 0 0.760
1178580_1 -0.252 0.840 1 1 7 4665 1486 168 90 5780 1300 125 53 0 -0.252
1179356_1 0.702 1.627 1 1 8 680 299 164 97 458 189 123 47 0 0.702
1180144_1 -0.035 0.976 1 1 9 4138 1198 161 94 4428 897 123 45 0 -0.035
1180932_1 -0.734 0.601 1 1 10 665 260 179 113 976 286 122 42 0 -0.734
1181708_1 0.429 1.346 1 1 11 983 386 166 95 762 252 121 41 0 0.429
1182496_1 -0.534 0.691 1 1 12 440 199 170 87 535 188 122 45 0 -0.534
1183572_1 0.364 1.287 1 1 13 3402 1018 169 97 2774 784 121 45 0 0.364
1184348_1 0.285 1.218 1 1 14 810 319 178 115 675 266 127 49 0 0.285
1185136_1 0.196 1.146 1 1 15 493 229 186 88 417 182 134 49 0 0.196
1185924_1 -0.208 0.866 1 1 16 752 349 170 91 829 296 119 42 0 -0.208
1186700_1 0.276 1.211 1 1 17 2398 815 171 90 2063 584 120 47 0 0.276
1187488_1 -0.266 0.831 1 1 18 1033 402 171 81 1218 421 123 44 0 -0.266
1188564_1 0.738 1.668 1 1 19 6382 1720 168 83 4053 1038 119 42 0 0.738
1189340_1 -0.043 0.971 1 1 20 2081 695 166 85 2202 578 118 53 0 -0.043

Total number of rows: 21794

Table truncated, full table size 1514 Kbytes.




Supplementary data files not provided
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