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Sample GSM41869 Query DataSets for GSM41869
Status Public on Feb 10, 2006
Title F72A/R73A_16h:Blank_16h - mAdb ID 56131
Sample type RNA
 
Channel 1
Source name Blank_16h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_16h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56131
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 16 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 16
SAMPLE: F72A/R73A_16h:Blank_16h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.473 0.360 1 1 1 433 197 65 28 1135 435 65 25 0 -1.473
1174364_1 -0.389 0.764 1 1 2 3562 1433 64 30 4860 2245 64 28 0 -0.389
1175152_1 -0.582 0.668 1 1 3 2213 757 61 32 3441 1139 67 29 0 -0.582
1175940_1 0.120 1.087 1 1 4 1112 321 64 39 1081 281 71 59 0 0.120
1176716_1 -0.433 0.741 1 1 5 4269 1984 62 38 6016 2570 67 57 0 -0.433
1177504_1 0.673 1.594 1 1 6 1152 362 62 31 783 285 67 25 0 0.673
1178580_1 -0.113 0.924 1 1 7 4676 2811 59 31 5294 3150 64 26 0 -0.113
1179356_1 -1.099 0.467 1 1 8 282 128 60 48 566 171 68 45 0 -1.099
1180144_1 -0.057 0.961 1 1 9 1549 343 63 32 1688 481 69 132 0 -0.057
1180932_1 -0.701 0.615 1 1 10 600 277 62 42 984 285 68 137 0 -0.701
1181708_1 0.285 1.218 1 1 11 673 309 61 48 590 340 64 26 0 0.285
1182496_1 -1.531 0.346 1 1 12 297 141 61 33 778 297 64 28 0 -1.531
1183572_1 -0.043 0.971 1 1 13 3232 863 65 58 3485 1140 69 128 0 -0.043
1184348_1 -0.260 0.835 1 1 14 420 187 66 53 513 197 69 113 0 -0.260
1185136_1 0.091 1.065 1 1 15 181 103 61 31 185 100 67 24 0 0.091
1185924_1 -0.889 0.540 1 1 16 543 235 63 40 1000 285 69 31 0 -0.889
1186700_1 0.141 1.102 1 1 17 1559 424 65 40 1487 472 68 34 0 0.141
1187488_1 -0.751 0.594 1 1 18 725 209 64 32 1233 370 68 32 0 -0.751
1188564_1 0.614 1.531 1 1 19 1141 321 62 36 806 255 68 28 0 0.614
1189340_1 -0.049 0.967 1 1 20 2167 701 62 57 2351 720 71 73 0 -0.049

Total number of rows: 21794

Table truncated, full table size 1470 Kbytes.




Supplementary data files not provided
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