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Sample GSM41870 Query DataSets for GSM41870
Status Public on Feb 10, 2006
Title R80A_0h:Blank_0h - mAdb ID 56137
Sample type RNA
 
Channel 1
Source name Blank_0h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_0h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56137
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 0 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: none
treatment_time (hrs): 0
SAMPLE: R80A_0h:Blank_0h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.591 0.664 1 1 1 334 182 90 69 499 176 100 42 0 -0.591
1174364_1 0.034 1.024 1 1 2 8981 5632 98 132 9521 5748 102 49 0 0.034
1175152_1 -0.271 0.829 1 1 3 1413 718 97 134 1827 896 103 53 0 -0.271
1175940_1 0.253 1.192 1 1 4 2803 703 100 68 2569 426 107 48 0 0.253
1176716_1 0.409 1.328 1 1 5 15862 3951 100 68 12988 3310 103 44 0 0.409
1177504_1 1.027 2.037 1 1 6 6495 1436 102 68 3511 683 105 50 0 1.027
1178580_1 0.012 1.008 1 1 7 2912 1453 99 68 3133 1445 104 51 0 0.012
1179356_1 -0.658 0.634 1 1 8 246 154 100 66 351 158 101 55 0 -0.658
1180144_1 0.075 1.053 1 1 9 2466 818 97 74 2546 579 104 72 0 0.075
1180932_1 -0.167 0.891 1 1 10 680 359 95 100 814 325 101 75 0 -0.167
1181708_1 0.876 1.835 1 1 11 1709 555 98 76 1063 410 110 43 0 0.876
1182496_1 -1.005 0.498 1 1 12 234 128 100 101 399 192 107 46 0 -1.005
1183572_1 0.231 1.174 1 1 13 1868 636 104 91 1738 499 107 245 0 0.231
1184348_1 -0.035 0.976 1 1 14 320 207 106 70 350 128 112 217 0 -0.035
1185136_1 -0.676 0.626 1 1 15 304 270 112 92 436 161 103 40 0 -0.676
1185924_1 -0.507 0.704 1 1 16 349 203 104 88 484 174 106 78 0 -0.507
1186700_1 0.541 1.455 1 1 17 2162 659 104 69 1640 378 105 52 0 0.541
1187488_1 0.289 1.222 1 1 18 1511 498 104 110 1355 384 105 67 0 0.289
1188564_1 0.474 1.389 1 1 19 11467 2376 114 104 8988 1925 115 65 0 0.474
1189340_1 0.073 1.052 1 1 20 1102 569 109 81 1132 496 107 52 0 0.073

Total number of rows: 21794

Table truncated, full table size 1470 Kbytes.




Supplementary data files not provided
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