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Sample GSM41876 Query DataSets for GSM41876
Status Public on Feb 10, 2006
Title F72A/R73A_1h:Blank_1h - mAdb ID 56123
Sample type RNA
 
Channel 1
Source name Blank_1h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56123
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 1 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 1
SAMPLE: F72A/R73A_1h:Blank_1h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.949 0.518 1 1 1 514 237 111 63 851 326 110 389 0 -0.949
1174364_1 -0.337 0.792 1 1 2 2941 1086 113 94 3511 1020 109 90 0 -0.337
1175152_1 -0.673 0.627 1 1 3 845 315 114 93 1215 367 105 89 0 -0.673
1175940_1 0.050 1.035 1 1 4 1129 362 115 64 1040 243 107 44 0 0.050
1176716_1 -0.218 0.860 1 1 5 4294 1182 112 54 4744 1059 112 41 0 -0.218
1177504_1 0.184 1.136 1 1 6 1668 387 115 58 1410 288 108 40 0 0.184
1178580_1 0.110 1.079 1 1 7 8442 2936 113 58 7455 2462 105 38 0 0.110
1179356_1 -0.916 0.530 1 1 8 257 128 114 56 363 125 106 37 0 -0.916
1180144_1 -0.506 0.704 1 1 9 1572 491 114 58 2076 529 104 32 0 -0.506
1180932_1 -0.796 0.576 1 1 10 507 283 115 72 753 239 105 78 0 -0.796
1181708_1 -0.039 0.973 1 1 11 583 260 115 61 566 195 108 35 0 -0.039
1182496_1 -0.856 0.552 1 1 12 290 126 109 60 417 158 105 34 0 -0.856
1183572_1 -0.510 0.702 1 1 13 1208 377 116 66 1585 410 104 32 0 -0.510
1184348_1 -0.628 0.647 1 1 14 287 105 111 59 363 137 104 35 0 -0.628
1185136_1 0.594 1.510 1 1 15 262 136 113 72 202 75 108 31 0 0.594
1185924_1 -1.202 0.435 1 1 16 358 150 122 66 621 229 104 33 0 -1.202
1186700_1 -0.370 0.774 1 1 17 1051 323 119 68 1255 297 108 34 0 -0.370
1187488_1 -1.013 0.496 1 1 18 447 189 115 69 742 204 104 35 0 -1.013
1188564_1 -0.003 0.998 1 1 19 1838 539 115 66 1745 444 101 33 0 -0.003
1189340_1 -0.675 0.626 1 1 20 955 380 114 60 1383 411 104 90 0 -0.675

Total number of rows: 21794

Table truncated, full table size 1502 Kbytes.




Supplementary data files not provided
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