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Sample GSM41881 Query DataSets for GSM41881
Status Public on Feb 10, 2006
Title F72A/R73A_12h:Blank_12h - mAdb ID 56129
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56129
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: F72A/R73A_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.855 0.553 1 1 1 791 263 83 47 1380 306 92 30 0 -0.855
1174364_1 0.192 1.143 1 1 2 8554 2208 84 46 7544 1881 91 59 0 0.192
1175152_1 -0.301 0.812 1 1 3 1750 414 87 43 2154 381 94 58 0 -0.301
1175940_1 -0.170 0.889 1 1 4 1426 310 92 42 1605 301 96 35 0 -0.170
1176716_1 -0.121 0.920 1 1 5 8295 2002 91 44 9062 1809 94 30 0 -0.121
1177504_1 0.275 1.210 1 1 6 2828 420 93 41 2368 279 95 32 0 0.275
1178580_1 0.135 1.098 1 1 7 10137 1630 91 45 9291 1214 95 31 0 0.135
1179356_1 -0.145 0.905 1 1 8 982 305 93 39 1087 333 99 27 0 -0.145
1180144_1 0.123 1.089 1 1 9 3058 768 91 39 2839 538 100 32 0 0.123
1180932_1 -0.678 0.625 1 1 10 607 220 91 42 923 236 93 33 0 -0.678
1181708_1 0.245 1.185 1 1 11 1098 289 88 43 949 210 92 30 0 0.245
1182496_1 -1.347 0.393 1 1 12 307 131 88 39 653 236 93 31 0 -1.347
1183572_1 0.025 1.017 1 1 13 2242 561 87 40 2222 518 92 28 0 0.025
1184348_1 0.004 1.003 1 1 14 467 211 89 40 475 126 96 32 0 0.004
1185136_1 0.582 1 1 15 116 76 94 38 136 67 98 32 -50 -0.781
1185924_1 -0.915 0.530 1 1 16 465 180 90 59 806 246 95 29 0 -0.915
1186700_1 0.152 1.111 1 1 17 2762 808 91 70 2512 598 95 31 0 0.152
1187488_1 -0.432 0.741 1 1 18 909 257 92 41 1202 215 94 30 0 -0.432
1188564_1 0.175 1.129 1 1 19 3846 715 89 46 3444 671 97 31 0 0.175
1189340_1 -0.425 0.745 1 1 20 1397 454 87 38 1864 550 96 29 0 -0.425

Total number of rows: 21794

Table truncated, full table size 1493 Kbytes.




Supplementary data files not provided
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