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Sample GSM41882 Query DataSets for GSM41882
Status Public on Feb 10, 2006
Title F72A/R73A_24h:Blank_24h - mAdb ID 56134
Sample type RNA
 
Channel 1
Source name Blank_24h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_24h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 56134
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 24 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.3p08-032904
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 24
SAMPLE: F72A/R73A_24h:Blank_24h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.413 0.751 1 1 1 411 147 87 80 576 149 128 60 0 -0.413
1174364_1 0.082 1.059 1 1 2 4796 1153 87 53 4738 1179 118 39 0 0.082
1175152_1 -0.201 0.870 1 1 3 860 349 91 59 1036 293 118 48 0 -0.201
1175940_1 -0.536 0.690 1 1 4 990 330 92 68 1474 332 122 58 0 -0.536
1176716_1 0.150 1.109 1 1 5 7607 1467 89 62 7161 1484 121 56 0 0.150
1177504_1 -0.488 0.713 1 1 6 1943 535 89 67 2828 697 128 71 0 -0.488
1178580_1 -0.154 0.898 1 1 7 4562 1310 89 63 5302 1155 131 74 0 -0.154
1179356_1 0.473 1.388 1 1 8 248 153 85 44 247 129 125 52 0 0.473
1180144_1 0.435 1.352 1 1 9 4179 862 88 60 3268 688 125 48 0 0.435
1180932_1 -0.435 0.740 1 1 10 392 202 88 65 549 183 122 65 0 -0.435
1181708_1 0.223 1.167 1 1 11 1379 453 91 60 1265 395 119 51 0 0.223
1182496_1 -0.293 0.816 1 1 12 255 133 86 67 338 126 123 40 0 -0.293
1183572_1 -0.257 0.837 1 1 13 1263 391 92 57 1581 414 128 63 0 -0.257
1184348_1 0.157 1.115 1 1 14 498 218 89 59 504 145 123 65 0 0.157
1185136_1 0.016 1.011 1 1 15 580 378 101 55 613 220 121 44 0 0.016
1185924_1 -0.258 0.836 1 1 16 287 144 93 81 362 141 121 39 0 -0.258
1186700_1 0.191 1.141 1 1 17 2953 835 93 94 2729 664 126 119 0 0.191
1187488_1 0.071 1.051 1 1 18 790 248 91 55 818 252 127 115 0 0.071
1188564_1 -0.071 0.952 1 1 19 3186 895 92 62 3502 933 126 60 0 -0.071
1189340_1 -0.186 0.879 1 1 20 930 339 89 59 1115 377 121 58 0 -0.186

Total number of rows: 21794

Table truncated, full table size 1507 Kbytes.




Supplementary data files not provided
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