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Sample GSM41887 Query DataSets for GSM41887
Status Public on Feb 10, 2006
Title WT_0h:Blank_0h - mAdb ID 49501
Sample type RNA
 
Channel 1
Source name Blank_0h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_0h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49501
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 0 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: none
treatment_time (hrs): 0
SAMPLE: WT_0h:Blank_0h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.000 0.500 1 1 1 850 296 309 177 1897 492 478 247 0 -1.000
1174364_1 -0.287 0.820 1 1 2 3339 1412 300 186 5330 1953 469 184 0 -0.287
1175152_1 -1.251 0.420 1 1 3 543 184 277 118 1307 326 477 138 0 -1.251
1175940_1 -0.343 0.788 1 1 4 1785 506 309 196 2942 609 487 204 0 -0.343
1176716_1 0.125 1.090 1 1 5 6998 2947 285 186 8551 3467 478 120 0 0.125
1177504_1 0.543 1.457 1 1 6 6257 1849 303 748 5831 1566 472 327 0 0.543
1178580_1 -0.435 0.740 1 1 7 5865 2263 308 713 10318 3600 472 933 0 -0.435
1179356_1 -1.275 0.413 1 1 8 506 185 332 184 1020 233 468 136 0 -1.275
1180144_1 0.072 1.051 1 1 9 4544 2436 331 148 5739 2575 484 138 0 0.072
1180932_1 -0.742 0.598 1 1 10 594 237 294 128 1131 274 473 134 0 -0.742
1181708_1 -0.473 0.720 1 1 11 996 469 301 144 1710 681 445 134 0 -0.473
1182496_1 -1.684 0.311 1 1 12 406 139 298 165 886 192 431 134 0 -1.684
1183572_1 1.311 1 1 13 305 145 307 158 417 104 423 117 -50 0.391
1184348_1 -0.236 0.849 1 1 14 927 398 287 135 1381 406 393 119 0 -0.236
1185136_1 -0.072 0.951 1 1 15 851 427 248 177 1275 560 444 154 0 -0.072
1185924_1 -0.612 0.654 1 1 16 588 230 299 162 982 307 403 132 0 -0.612
1186700_1 0.108 1.078 1 1 17 2712 1088 332 243 3307 998 412 142 0 0.108
1187488_1 -0.482 0.716 1 1 18 1148 487 269 139 2024 593 415 113 0 -0.482
1188564_1 60.307 1 1 19 352 191 306 145 422 108 436 145 -50 5.914
1189340_1 -0.005 0.997 1 1 20 1621 699 293 148 2244 795 497 167 0 -0.005

Total number of rows: 21794

Table truncated, full table size 1537 Kbytes.




Supplementary data files not provided
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