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Sample GSM41890 Query DataSets for GSM41890
Status Public on Feb 10, 2006
Title WT_1h:Blank_1h - mAdb ID 49502
Sample type RNA
 
Channel 1
Source name Blank_1h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49502
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 1 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 1
SAMPLE: WT_1h:Blank_1h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.358 0.780 1 1 1 1549 623 323 199 2351 440 405 113 0 -0.358
1174364_1 0.175 1.129 1 1 2 8384 2077 295 141 9292 2267 421 153 0 0.175
1175152_1 -0.545 0.685 1 1 3 893 362 319 166 1437 347 400 110 0 -0.545
1175940_1 -0.212 0.863 1 1 4 1510 564 328 187 2082 588 387 120 0 -0.212
1176716_1 0.273 1.208 1 1 5 8210 1622 308 162 8498 1155 401 110 0 0.273
1177504_1 0.617 1.534 1 1 6 4393 1085 283 159 3713 769 396 106 0 0.617
1178580_1 0.205 1.153 1 1 7 9758 2679 287 229 10585 2174 416 113 0 0.205
1179356_1 -0.763 0.589 1 1 8 588 290 300 266 1005 201 400 95 0 -0.763
1180144_1 0.477 1.391 1 1 9 5836 2565 284 177 5305 1753 365 96 0 0.477
1180932_1 -0.354 0.783 1 1 10 748 419 296 177 1093 329 378 106 0 -0.354
1181708_1 0.070 1.050 1 1 11 1326 754 301 198 1592 596 383 95 0 0.070
1182496_1 -1.155 0.449 1 1 12 483 211 310 160 853 184 376 93 0 -1.155
1183572_1 39.617 1 1 13 312 173 280 157 386 87 385 144 -50 5.308
1184348_1 -0.122 0.919 1 1 14 952 429 307 176 1243 338 374 159 0 -0.122
1185136_1 -0.372 0.773 1 1 15 737 267 0 0 1181 295 0 0 0 -0.372
1185924_1 -0.256 0.838 1 1 16 922 462 303 150 1267 393 352 94 0 -0.256
1186700_1 0.263 1.200 1 1 17 2287 830 305 205 2418 547 373 113 0 0.263
1187488_1 -0.097 0.935 1 1 18 994 524 300 153 1296 407 377 98 0 -0.097
1188564_1 94.091 1 1 19 350 174 274 147 388 85 390 106 -50 6.556
1189340_1 -0.271 0.829 1 1 20 1579 703 323 221 2266 719 390 242 0 -0.271

Total number of rows: 21794

Table truncated, full table size 1533 Kbytes.




Supplementary data files not provided
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